Package: inferCSN 1.1.7

Meng Xu
inferCSN: Inferring Cell-Specific Gene Regulatory Network
An R package for inferring cell-type specific gene regulatory network from single-cell RNA data.
Authors:
inferCSN_1.1.7.tar.gz
inferCSN_1.1.7.zip(r-4.5)inferCSN_1.1.7.zip(r-4.4)inferCSN_1.1.7.zip(r-4.3)
inferCSN_1.1.7.tgz(r-4.5-x86_64)inferCSN_1.1.7.tgz(r-4.5-arm64)inferCSN_1.1.7.tgz(r-4.4-x86_64)inferCSN_1.1.7.tgz(r-4.4-arm64)inferCSN_1.1.7.tgz(r-4.3-x86_64)inferCSN_1.1.7.tgz(r-4.3-arm64)
inferCSN_1.1.7.tar.gz(r-4.5-noble)inferCSN_1.1.7.tar.gz(r-4.4-noble)
inferCSN_1.1.7.tgz(r-4.4-emscripten)inferCSN_1.1.7.tgz(r-4.3-emscripten)
inferCSN.pdf |inferCSN.html✨
inferCSN/json (API)
# Install 'inferCSN' in R: |
install.packages('inferCSN', repos = c('https://mengxu98.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mengxu98/infercsn/issues
Pkgdown site:https://mengxu98.github.io
- example_ground_truth - Example ground truth data
- example_matrix - Example matrix data
- example_meta_data - Example meta data
Last updated 2 days agofrom:04cc7f3503. Checks:12 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 31 2025 |
R-4.5-win-x86_64 | OK | Mar 31 2025 |
R-4.5-mac-x86_64 | OK | Mar 31 2025 |
R-4.5-mac-aarch64 | OK | Mar 31 2025 |
R-4.5-linux-x86_64 | OK | Mar 31 2025 |
R-4.4-win-x86_64 | OK | Mar 31 2025 |
R-4.4-mac-x86_64 | OK | Mar 31 2025 |
R-4.4-mac-aarch64 | OK | Mar 31 2025 |
R-4.4-linux-x86_64 | OK | Mar 31 2025 |
R-4.3-win-x86_64 | OK | Mar 31 2025 |
R-4.3-mac-x86_64 | OK | Mar 31 2025 |
R-4.3-mac-aarch64 | OK | Mar 31 2025 |
Exports:%ss%as_matrixcalculate_accuracycalculate_auccalculate_auprccalculate_auroccalculate_f1calculate_gene_rankcalculate_jicalculate_metricscalculate_precisioncalculate_recallcalculate_sicheck_sparsityfilter_sort_matrixfit_srminferCSNlog_messagematrix_to_tablemeta_cellsnetwork_formatnetwork_siftnormalizationparallelize_funplot_coefficientplot_coefficientsplot_contrast_networksplot_dynamic_networksplot_edges_comparisonplot_embeddingplot_histogramplot_network_heatmapplot_scatterplot_static_networkssimulate_sparse_matrixsingle_networksparse_corsparse_regressionsplit_indicessubsamplingtable_to_matrixweight_sift
Dependencies:cachemclicodacodetoolscolorspacecpp11doParalleldplyrfansifarverfastmapforeachgenericsggforceggnetworkggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnetworknlmepbapplypillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppParallelrlangscalessnastatnet.commonstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr